NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10008625

Scaffold Ga0315904_10008625


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10008625 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13446
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F047642Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100086252F002540AGGAGGMPDYGATPKELEQYGNGLNLWQSLMLLQRWAPLIGYGQRFVAEPDPYRRSLIVADAVEWLAAQTHAKVDDQLVSKLAAVLKTPAGEDLVRWVMQQVEAVR
Ga0315904_1000862526F047642AGGAGMITNPSSPSENEYLAAIAGLGEQTPSPAPKPTYAVGDFVSGLSGGKRWSGRIFAVDGDRLSIEFPGAWLAVSARDVLTVWARDVTH

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