| Basic Information | |
|---|---|
| Taxon OID | 3300031951 Open in IMG/M |
| Scaffold ID | Ga0315904_10005845 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16966 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (84.38%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000141 | Metagenome / Metatranscriptome | 1941 | Y |
| F003153 | Metagenome / Metatranscriptome | 504 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315904_1000584510 | F003153 | AGGAG | MPVVVNGVKQLQKAMRDVDKNLNKEMSKNVKRAMLIVRDRARGYLPQQSEVLSGWGKGTASIDTVKDPKRLFPPYDYALAVAGVAYSAGQNKRNNSGYRAAFYVYNNSRSGAIFETAGRLNKPRGNKSLNPNAPAEFNSAAEMLSSMKGQGKQRGRVIYRAWDETKNKVIPAVVEAIETVAVKFKKDTELRKAA |
| Ga0315904_1000584528 | F000141 | AGGAG | MHTRFKCNGCSRKTEFLWLDQLDMPDGFKAYQCMDCGCVGVKNIAEALDIPDSDISRCDKCGSWKFITVVCHTCQLIKGVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |