NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308406_1027124

Scaffold Ga0308406_1027124


Overview

Basic Information
Taxon OID3300031948 Open in IMG/M
Scaffold IDGa0308406_1027124 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F059548Metagenome / Metatranscriptome133N
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0308406_10271241F098761N/ASEAARCLTRDMILWGKRGVVCVYTSPSFATVDVRLRRLTQYVYVTAGRFRRAGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG
Ga0308406_10271242F002229GGAGGMVTLLTLDGVEDVDYTPSDAEIRVSLDDRALYGMVLGGVTWMRLTSGVGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRVLCGGCVEDDEEADDACYE
Ga0308406_10271245F059548AGGGGGMPTRREDALWSVVHQRSAHLRALLDGLDGVDIGVTYELDYYPYAIVELLRVREDAPP
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