NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100000605

Scaffold Ga0308175_100000605


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100000605 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24268
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (53.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008580Metagenome / Metatranscriptome331Y
F057580Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_10000060512F057580N/AVRFLLATAGLLLLAGLAVAGRPTAHTLRKSAGGPIEAIAENNGVAAWFTFNTKTRTCNAVHVLSPGKRDRTLPRPAPGSKTCNHSLKDGQSQLAVASRMSTALWTLHESGPQPVDDVLAASYGGPERTVGSLHHASDGTGDWLGGVAGAGRTLAYSWVDVEYVDPAGCIGGTGSCKEKIADGGIRLVTKNSVTPLPGAEAALQLATSSGRIAYIPATIVHGNRPSATTNASLPIVDATTGELLGQPKVHGIPIAIALSSNVLAVLTTLEGPHDRISWFSATDGTKLGSVLVSVGATPQLAASDQLIVYHVGRLLHDVSTRTRRLGKLVQTGLNSVGLSLAHGRLVWAENHNGTGRLRALAVG
Ga0308175_10000060518F008580GGTGGMKRKAVALAGFASGALAGTAAYRRWFGGRRERLDVYFDDGSFVTFGSGSPEAARLLPLARQVLVATRKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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