NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100000019

Scaffold Ga0308175_100000019


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100000019 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140430
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (68.61%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006327Metagenome / Metatranscriptome376Y
F012524Metagenome / Metatranscriptome280Y
F017527Metagenome / Metatranscriptome240Y
F028903Metagenome / Metatranscriptome190Y
F032847Metagenome / Metatranscriptome179Y
F041385Metagenome / Metatranscriptome160Y
F045020Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_100000019104F045020AGGAMPMLHGCAFPGCSTFTLSTYCVEHELLVRALKESERAHGASLVDHPEDAPLSAETASEAQEPAAL
Ga0308175_1000000197F006327AGGGGGMVQVTIETGSRAEAELIAEELPTKAEAQSWRGFGVIRLAAKSKKDVQELIDSVSRGFDAHGLQWARVRYDDEERVFKANGHRAG
Ga0308175_10000001974F028903GAGMNLTQLAPDEPLSPELVLILSPELRVQALARLGPPVWPAPRPRTAHAPAPARPSFRRSLAVALVARVGQLGLVFAVVTIATLAMSIVAHAVR
Ga0308175_10000001978F017527AGGAGMAAVRRGSWVALRYVTALFFLGVVVQFFLVGYGLFAMKHGATIDDAKSLDSHRGLGWILSTYGAPLMLILVLLAWPARRLLWAWIVLAVLGFFQAILAAGGYHHWGLGMFHPVNAVILLGLSGRLAHYAWTTAKSRDAAAAPATAPSG
Ga0308175_10000001983F012524N/AMDVSAGISTDTADASGAPRRSDKIARLLREIDALIADDEAADRQISGGWRTFSDIMAAAHTHTWDAYNVDLSRDSESFRRLSRRRQDAVRRVFGTIYRAESIVDDWMDRIVAALPREPDYDSMRAALMTQEHDERMHRGSLLRVATEVLGVEAADADRMARKYNNFVAEILFDRFDDEMRHLLRPNRPIEDVFTAIFIYGVISEDVVANSDVVIRRAKGNALYDAFDLPGMKEGQTHVRRDEGRHVRIAVLATHRFLEEFDGAAERLLGISTDYMDLADRMVRRAKASRGLIDAHLAESYGPDVDSLYYYVMNMKRLAVRLDELGLREGVFEVKRRVDAAIAELSGADGEPIVETPSRLLRIVGPKVLKLAGASRLAS
Ga0308175_10000001988F041385AGGAGGVRRIVLFGLVLFVATVAAAAAATGGLPNIGKPSMKTQPVYRGYYDHHIDTYLVTDVSSKSQATAMHVNFSAELKAVKGLPEQYFVRGRAAKGQLTIFGSEPGEADYNPLWKEVWLTWKKGVKPVLIGQDDQIDALEKQGKLTEKDAHIVLNAPILKVGKGG
Ga0308175_1000000199F032847GAGMLELAMFAGLGLVAVWAYCRYPRLRPGSLVIAAIHVIVSFGGFALLPTALSWLLPVLPTHALQRCVVLALLIATLTYVLLSWVWLLARILHDLFGGTPRGGHPVAHGS
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