NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302322_100337254

Scaffold Ga0302322_100337254


Overview

Basic Information
Taxon OID3300031902 Open in IMG/M
Scaffold IDGa0302322_100337254 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1708
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046467Metagenome / Metatranscriptome151N
F065927Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0302322_1003372542F065927AGGAGMDPITRAPLSSIEPPSVRSFQALDHFVTAGGMRVTYYALSLDKVPADFFADPDGAWSYDLLARAAGFASHSGVAIGALKADFNGHPEGAAVVTLNALTRPYVAIVECPIAYDYLAQPEDSASSAA
Ga0302322_1003372543F046467N/AMAQKRTALFPLRVTWGTLKNVSDLRDPDRDPDHLLAPARLIELESAAEPARKRLTELPAPALELVQAWLAAELSVARERALEVADFEFAECVCELEQRLRFPGSFLRDAQASQRIQTVLGARAQFRVIQGGG
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