NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307406_10577627

Scaffold Ga0307406_10577627


Overview

Basic Information
Taxon OID3300031901 Open in IMG/M
Scaffold IDGa0307406_10577627 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021438Metagenome / Metatranscriptome219Y
F046231Metagenome / Metatranscriptome151Y
F064480Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307406_105776271F064480AGGAGMSSTTDHAHEGRDQTVAPSTDAQGSDGTMDAPPEMEASFEEIE
Ga0307406_105776272F046231AGGAMATGRSQLSIVIDVQALVTHAASVAMMEREMGNPPRLIRTPDVCYLFHARDEARLPGLVDRWELYGIAAQVVQIPPTGGQSTRYSHPAP
Ga0307406_105776273F021438AGGAGGMKPIKTPTQLRLTQDLLERADALIEVMAADPEVRALGMPTRTAVLRLAIARGLRDLERQYQRPTPAYASTPSAATTPHDATPRSREGTLSHVYAGRDGEDQSPGLPRDGHGVSAPAPKGP
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