NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315312_1000015

Scaffold Ga0315312_1000015


Overview

Basic Information
Taxon OID3300031898 Open in IMG/M
Scaffold IDGa0315312_1000015 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)392884
Total Scaffold Genes430 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)306 (71.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003098Metagenome / Metatranscriptome507Y
F007209Metagenome355Y
F102445Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315312_1000015148F007209GGCGGMLRFKYSLTTDGERRCAKNEFYLQQTPKYKGYTEKIFKTLYTKEPLTIREISYHTGIDRRAVNGIITFNVMAGYIRRISLQM
Ga0315312_1000015161F102445AGGMTDFRQVIFKMNRRQLLFATLMGSLAFIVRNAGLYVLIYEPFRFDPRWVFSLLAACWAGPEGGLIAGTLAAMKLPYPLIDLAAIPVHFFVGLMARLLILRNKNSLYACFLWPILGVPSYWLATFLFTPAKATIILVPVLIFIGVSSALLTFGVGLAVKKRANNLLGFLDV
Ga0315312_100001573F003098N/AMAKSLEFIFQFPPIYGVFDTGYGVVYIFGEMHENAIEDVIVHETLHYVLLKLAGKRASLKLDRVYRQIVSG
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