NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318551_10109711

Scaffold Ga0318551_10109711


Overview

Basic Information
Taxon OID3300031896 Open in IMG/M
Scaffold IDGa0318551_10109711 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052468Metagenome142Y
F083541Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0318551_101097112F052468GAGGMKEERQMSRNLLSLDSVYIRWRAEFAPFEANCFDALCEFVRVHFDDLIDGYYRDGHEALNDFPAWAFERYLRGVVS
Ga0318551_101097113F083541GGAGGVPREPRIRVKALIYSVAVTLLLSAAYVPRLAGAASLCETCELQIGIGDTYHFWGTTGGVVFPITLNWSDGRYELGLFRLSSRQILY

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