NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315318_10245533

Scaffold Ga0315318_10245533


Overview

Basic Information
Taxon OID3300031886 Open in IMG/M
Scaffold IDGa0315318_10245533 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010273Metagenome / Metatranscriptome306Y
F076175Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0315318_102455333F010273N/AMKEKLKSRKLWMAIGGLLTVAATEWLNLSPELTEQIVGAVVVIIPCYLGGQSIVDAFAQYAKKEEPPTS
Ga0315318_102455334F076175GAGMILAALKGLAAIPEIVEQLKGIGSKLDEKQALERLGEKRDRNRAAIDRVLESKDGQRGEIDSSPVIREGDDGST

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