NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10127719

Scaffold Ga0315285_10127719


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10127719 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2157
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F013396Metagenome271N

Sequences

Protein IDFamilyRBSSequence
Ga0315285_101277192F003579N/AMTTIPIAPYTMGSPASPKIGTQFEVRYINYTSPTAVADCHLLDADGVEIMPVGLVPATAEQCAEWTDDAAFAAVLAVNAGFELVSEE
Ga0315285_101277193F005113GGAGGMTKDEHKNAIVSQLQQQSLNLLVDSLAAALAEIETLKAAANADKPAP
Ga0315285_101277194F013396N/AVNLKRSLLLAVLALGLVALLALALRSERVLTAGLPLRIIVASEAEAWTLAGPSAVVVLGTGSMAPYIPAAPKGADPLRTVSALIVLVSGARYADIKAGSLCIYVPRWAGRNVMHQAAQIDSGGWIMTGLGNKEYENRERVTAANFVGIVSRTYVWGK
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