NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10000300

Scaffold Ga0315285_10000300


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10000300 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50181
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (73.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008858Metagenome / Metatranscriptome327Y
F015062Metagenome257Y
F017424Metagenome / Metatranscriptome241Y
F083727Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315285_1000030036F083727AGGAGMHGQQTMKYLNDKAVADVIMTNHKVDTNAISPAFQKAVEEALAAKAKAAAN
Ga0315285_100003005F008858AGGAGMAENLQGFRQTYQETGKLSSGGGPGEKNLDKGASGSHRDNNWKKGAAQNKMAKDCKVGPDKNLKDIKGGNFY
Ga0315285_100003006F017424N/AMKDFLSEIIGRVKTEQKLIAESVTAGNNVNSFEDYQRLVGRHEGLTLTLSIINEILTEDEEDES
Ga0315285_1000030060F015062N/AMKKITVYKISATAPRLSDEDPDPIEQDETEGVSSSIIEGWLPWDPEDITDVRRLVAEKLPPKQKFIIDSFLDGLTYTDVCVTEKYWRYHFTKGIELIRKELKL
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