| Basic Information | |
|---|---|
| Taxon OID | 3300031885 Open in IMG/M |
| Scaffold ID | Ga0315285_10000002 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 499427 |
| Total Scaffold Genes | 545 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 440 (80.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.508 | Long. (o) | -110.3268 | Alt. (m) | Depth (m) | 93 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003098 | Metagenome / Metatranscriptome | 507 | Y |
| F013170 | Metagenome | 273 | Y |
| F069682 | Metagenome | 123 | Y |
| F097611 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315285_10000002315 | F069682 | AGG | MMTKMAGEMLDRKLKLERVEACLNCKKFVECDDIGKFEECDDFEEVEGEAWAIKKLGESH |
| Ga0315285_10000002519 | F003098 | AGG | MTMGVALARPLKFIFQFPPIHGIFDAGYGVVYIFGGLHESEIENIIVHETLHYVLLRVAGKKASLKLDRIYTELDN |
| Ga0315285_1000000266 | F097611 | AGGA | VSGKEQTKQQEPQSTEEEKNIIAVSDLSPSVVELLREFRRTSGARDIPRVVEDITFSVFELMKLVNTSRDPRIYPQDAVRVMDTVKAVLEKFTRFGKPRQLEEAQKDIKTS |
| Ga0315285_1000000295 | F013170 | GGA | MSIHLHTTITKKTDDLIEQLTTTYGTKNRVIERALETLLRVERVGSCEDCAIKAKMNEQANLREALDLTSVGRKTIDSLLEVAIGDKTIQDFFVEQKVEAKNTVEILKGSVAWKMPSNFKEFMIILKEIESLTRLFEIASYNEIDSTVILRPNAFKRVPEIVALQVTTILEGLQVSFDFRVMGDDIAVKMIRQDLYPLRKKEFGGLLDEQVEKRLSSVTPVLFRNTLMLVGPAFMNWAEKHLEEPITDFGSLLEDIRIALGTAELPKEPREFVKSLLSAFVKMNWFKQAKILREVDEKTLDISFQSTTPSVAKLSIVMLSVVLATRGWKLLKFSAEQTSANISIQYVGSEDQSLLDQIVEVSLYQTIGRQFLDVIPVPRELFNSFASKVYESNKEKFDEIYRTMGVRVSNAIRMLARNDPEKIRKLAQTFILKNMGSTQPDAEIRLVDDEHFTVIFKKMDTLIMNSQRTLIESIFKELGYEISTTVFQNLLSFKLKPLERPALEPLPRKKLMQALINEMSASSCDEAFAIIKEPIDEMFPENYPWTIREVGDRIIDMYRELDIEVEIEYFEGGFTLKYKTCPYYKLVKTQQKTWLCNVRKKTLEYIISRVGHGKKGRIKIIKSLLQNEHPCEYAVFLTGFLERDEKTS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |