NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316220_1110541

Scaffold Ga0316220_1110541


Overview

Basic Information
Taxon OID3300031884 Open in IMG/M
Scaffold IDGa0316220_1110541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1028
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014949Metagenome / Metatranscriptome258Y
F017591Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0316220_11105411F014949N/AAPIMPDGKIGYKWMELPDTIAIQISNDYFGGMSWQTIKLDKTLKAQFYRVVETEYPAFVCYPGGKLPIPIDVPYPARVGQTAFFRGANFAPALPK
Ga0316220_11105412F017591AGGAMSTMIPNADALVAYIESFTGSSNDQEIRQCIFLAEMMMRNIELPGLRTNPYTTIGVANTYGQVPIPPDMNRPILFFYQGSGGGPNGAGPWIVYDRIGDRDIIEQSLDQQLYLNPINIPEVYHGSFSEVGQYYEFIPQLTAGAQINMYYYQTWPLLFSLESDGTTVVENNVVLQSFPEGYIYGTLHNYYQKRKMTDDANSWLAKFDLAWDTVEDQNNKGKWSGGHNKLTSIFQPRRNKRFSMR
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