NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316220_1013656

Scaffold Ga0316220_1013656


Overview

Basic Information
Taxon OID3300031884 Open in IMG/M
Scaffold IDGa0316220_1013656 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4422
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027373Metagenome194N
F033290Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0316220_10136567F033290GGAGGMTDDEIIEMSSKAGFNGLFSLIVFARMVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRARGNND
Ga0316220_10136568F027373GGAMTEQKTGFTIYKPPKPVGYWCLYGGGHTTKFSMYAKPTDEQIKNTTELLGWIWEDAK

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