NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316220_1010541

Scaffold Ga0316220_1010541


Overview

Basic Information
Taxon OID3300031884 Open in IMG/M
Scaffold IDGa0316220_1010541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5411
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016785Metagenome / Metatranscriptome244Y
F025723Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0316220_10105411F025723N/AFLAVARIGNISGTGEFSDKLLGFCWFDRYGYTTYSNEEISNAKFHHVDLALPAKTRVKLINAMIDQHILWAYQNGIPVVCSTSIRSDHSGFMRIHEKRGFKVSGSYAWIRTKEGLNGIKGIEIANN
Ga0316220_101054111F016785AGGMLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDGAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVTGTRDQLKVFEIEAAQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQEAEQEVDPGAELNEAIRNNTVYRAKYKLSGTKTNIRIKHVAQHYFVCNPTIPQIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALEND
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