NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308404_1017849

Scaffold Ga0308404_1017849


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1017849 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1594
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F092120Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10178491F092120N/ALADAPEYGFKDALPDFVAGLCGFFGVASPVLGFVRLPVTLMVVGFVFWTAWRVFRSLS
Ga0308404_10178492F000855GAGGMDWLEDFWSKIVGWWDHASANVYNGIVSFVNSLVEIWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS
Ga0308404_10178494F000642AGGAGMQEIGIALAICAVGAAVWYMRRREAGAGRVRGWLLLYDAVGGWRVLPASYGDAGIVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVMGVVLPAAFAYFTWAQVASLQALVAQILALVGDK
Ga0308404_10178495F002978N/AVTIVPWADRRLWFIQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPSPLPGVPPAPGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.