NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316036_105190

Scaffold Ga0316036_105190


Overview

Basic Information
Taxon OID3300031871 Open in IMG/M
Scaffold IDGa0316036_105190 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010305Metagenome / Metatranscriptome305Y
F068474Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0316036_1051901F068474GAGMIFFRVSAISTGSAAVFDSAFAPCHGSRLFTLRLPFNHSPAVSFLTSPTLGSFSRGLPSLRDLPGADALFVPAFAVFLSAVSIFYF
Ga0316036_1051902F010305GGTGGLKRAEKPHSKSSGRKALDGPATRPETPLAVENGVGKLTAPEKGAPNVSPGKREWRTPIP

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