NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10293762

Scaffold Ga0315909_10293762


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10293762 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F007469Metagenome / Metatranscriptome350Y
F020681Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_102937623F020681N/AVFIQLCHSYLKELVGQEKMVKFRCNFCSANSEFVWLDGYETHEGFRVYQCLKCCGVGVKNEAESTDTQEPVMRCTKCGAWMFADKECHTCAILMIKENMK
Ga0315909_102937624F002162N/AMPNYEYECPGEESVIILQLPMDHKTPNCQVCGAAMRRVYTAVPFILKGTGWAGKDG
Ga0315909_102937625F007469AGGAGGMGELQIIDGSGLTAIFTDDGVKLEPSTTYCDMCNDDRLLHEGDLLRCYNCHAINRIPYPVHRHDNA
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