NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10232766

Scaffold Ga0315909_10232766


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10232766 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1430
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F004666Metagenome / Metatranscriptome428Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_102327661F004666AGGAMATKREYLVSKGITVGKRGRFSSAANKALQDAAAAGLTFEAEKPQPKK
Ga0315909_102327663F001019GAGGMSHYEPSLEILEVNYSCSPGGVDMFEIYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFTVRTYAEWEMRELANV
Ga0315909_102327664F000441AGGAGGMQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLIKDRMEKTEGQNESL
Ga0315909_102327665F001781GGAGMKPQDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGMGFSLEYGAEQHQDDVLEWMLNRDYIVDTMFEDDEEEEEDATD
Ga0315909_102327666F000263N/APHLQRMVNAGVSGLDIMHGELKNLMLIAEEQLSWAIDVEKETEEAMDSMDRTRCEGVLDTLTELYKLTYDLSFAIGARNEATR

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