NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10163215

Scaffold Ga0315909_10163215


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10163215 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1815
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F014590Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101632152F000821AGGAGGMTEEYLRAKFNLCLDQAEKNIQEEDIALAIKNLERANSAMARLFGLEEDNE
Ga0315909_101632153F001477AGGAGGMSNVYTIHPPKSDLILFYEVVEPGGENTWGGASCIEAIQWLFLAPVGSRLLISAWDSDEEDAHLVGQTIDVTDLIKEASL
Ga0315909_101632156F014590GGAGGVRTRHLQLVTHEHSVTISERESALSPYGPVRAGLTTSQTTQDQQLTELLNSLESVVESLNFKSFTVYDTLVTAMEGVRVALSAIATDEVGTNLVH
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