NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10102421

Scaffold Ga0315909_10102421


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10102421 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2463
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010321Metagenome / Metatranscriptome305Y
F065783Metagenome / Metatranscriptome127N
F076888Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101024212F065783N/AMEELIKLESMNVWVDSNGVYQPNADGTPNTEDIKLYKDINPDWYQNLSSDDREKISIIIKHKTNN
Ga0315909_101024214F010321N/AMELDPIQQSELERLNKALANQSLQPDDVKKLREKKFNPKTGELQLFVDNGKGGVKMASVNIFE
Ga0315909_101024215F076888N/AMFINMLIGRNARKRAYIKPSFKGCVVVQGPTFPQWIKSVKESWVGYQVIFSTWEGADKSLYDESDIVIYNPIPASAGVSNLNYQKVSTINGFLKAKELGWDRALKVRGDFSTTTADGLFRLFDKGKLNLHGYWRKGYISDFFMEGEIDDIITLFKTDSIDGEYPEWHLTQRLYKSELYKKSVCICDKLQYDLADIKWEKLGYWFSVHGNGVHITNVLPEKLG
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