NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10038072

Scaffold Ga0315909_10038072


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10038072 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4580
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F003407Metagenome / Metatranscriptome488Y
F015839Metagenome / Metatranscriptome251Y
F026823Metagenome196N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100380721F026823GGAGMARGLKPRVEPAIEAALQKKGNLSDLDLAKLCFCARRSAARILFDLHRHELVYISGYTRVSANGQWRPLWSWGEGEDAIAPGPVPGSERIKKYRDKMSADDKDFDA
Ga0315909_100380722F003407GGAMTNDLPPAIDACLDLVNDLLHPEVYGHAIPSEVKARAFVVKTMLERLKARMESGTWPEA
Ga0315909_100380723F001182GAGMNYGPTPKCPRGLFEFPCSVEDVDLICFLEYSPEEKGSTDSYGAPYEPDLEEGMVLNNAYIAGTDVDIAHMILQSMVDHIEVSALEKYNDQ
Ga0315909_100380725F015839N/AMKNTTFTASVASDLFNAGFACDGHPFIAEQFYVLIENAAGKRFRHQAIFNGTQEVVCPESGDSYFPDLRAEASAKADRLAARVNAALEAGKFISPTFWDEVDPAYGSDEYFDQGTEAKRLFAEKAAA
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