NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10029470

Scaffold Ga0315909_10029470


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10029470 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5351
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000980Metagenome / Metatranscriptome814Y
F002245Metagenome / Metatranscriptome578Y
F005177Metagenome / Metatranscriptome409Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002947011F000980N/AMPAVLKARFLCYGSHKKSPEKLVNVSGQVYNTRMTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIQPTETKGNQMEESTVTISPVPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKTNAVLQGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENDYDLDLESEITDAIYAESNNGNIEIGDQEVCNVREA
Ga0315909_1002947012F000311GAGGMYFELTAPDGPSMKMAYWDAQTIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTRR
Ga0315909_100294704F002245AGGMSNLMKVPHTVVFEAIIDLDKIPANLLPALIALDETAIQQMCKGATVHALAMSNTLEVANENNTWAELTVKETIY
Ga0315909_100294708F005177AGGAMKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGTIRAYVYDNLKKKKTTALFINRESLPPKYELTNLLG

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