NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10020296

Scaffold Ga0315909_10020296


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10020296 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6701
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F041187Metagenome160Y
F058568Metagenome134Y
F103130Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1002029611F058568AGGAMPPIRVEKAGEIILKISALSTSLAHSPNIKLITMANTEIHRVVLTMSVTYNVSLSLVSGVGFEGVLGIGFLVIQGHQFFVSNW
Ga0315909_1002029613F000332GGAGMRWLILLLLLGLVGAVAKNGCYVREFWSIAYTIHNPSERHQQMSMWLTNNAQHCRSQDYVVMWNNLSEWAGAADSAELRTKVIHGYKDALDREKK
Ga0315909_100202964F103130AGGMAKAELRIRGREANAAARAVIRVQTTITQLEKKIDNYLAKP
Ga0315909_100202968F041187AGGMTNSPDFATWSQANLAKFAEEAYAKLCEQDDRIQHLQCDLKTAIEAYRALSKEHGALINASVLKTP
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