| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10001646 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30028 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (22.45%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009202 | Metagenome / Metatranscriptome | 321 | N |
| F009600 | Metagenome | 315 | Y |
| F010908 | Metagenome / Metatranscriptome | 297 | Y |
| F014228 | Metagenome | 264 | N |
| F015858 | Metagenome / Metatranscriptome | 251 | Y |
| F024249 | Metagenome | 206 | N |
| F025437 | Metagenome | 201 | N |
| F039112 | Metagenome | 164 | Y |
| F043238 | Metagenome / Metatranscriptome | 156 | Y |
| F093771 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000164612 | F025437 | N/A | MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAINKDHSSVAYAVRMHQSRLIYGDYQHYFKVACGVLEDNPMAWVDKPDYDSMQQELNKLNEVVMELSKYKELYITLKKTFDEF |
| Ga0315909_1000164613 | F010908 | N/A | LKQILSPFQKYECFAVDGVDYLVIDYTIIQDRDDKLVEWASEMKFKRLKDHKHYTMPISKIITNHKEGRAKLCKCK |
| Ga0315909_1000164614 | F009202 | N/A | MKHLRAMYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL |
| Ga0315909_1000164617 | F039112 | N/A | MTLSFSADVYTEMVQVQQAQIQALQNKVAELQARIEVLEQQAILFI |
| Ga0315909_1000164618 | F009600 | N/A | MRILDPGQLSYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKHDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLVVTK |
| Ga0315909_1000164621 | F014228 | N/A | MNSKLNPNRLAMWIIPMAATLAVLSSCASVKPVLESVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLALVLVAAYFVKRWIDKLLE |
| Ga0315909_1000164624 | F093771 | N/A | MTKESADSVLTSWSLTGTGLLVSYVHQAFGLAVLVASLGYTLWKWRRDYLKDKGAN |
| Ga0315909_1000164627 | F015858 | N/A | VSNFISWGVVYCSTWFGQVDETTLSIQNQSAPPCFAPANEIVEQFETRVLNDGGTFEGYDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN |
| Ga0315909_100016463 | F043238 | N/A | MKYETISQLLREMTTCGLSESILKDIETIEQVHLRFAYHDAPLGVPFEDWYAATFKTETK |
| Ga0315909_100016465 | F024249 | N/A | MIFTYNDLKFWLEQADLLPQSYWDALEDYDPDEKNSDEILAKWLGFVHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPGLDKDIYAKWMNWATQVASEE |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |