NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000023

Scaffold Ga0307478_10000023


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000023 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)226444
Total Scaffold Genes185 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (69.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000228Metagenome / Metatranscriptome1519Y
F007441Metagenome / Metatranscriptome351Y
F106181Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000023185F106181N/ARQNGGRGLALVGVSERIHNALKITQVEGFFRFYDSVGAAEEATAA
Ga0307478_1000002324F007441GGAGMKTCKVWVAIVATLSAFAAYAVDQEPATFKGEVSDSQCAFNVHSLTKSHEEMLKSKSGAAGHTAATCSIYCITQLGGKFVLTSKGHVYHLDNQDLPRRFVGQKVKLRGTLDTKGDSIHVVSIDAE
Ga0307478_1000002344F000228AGGAGLRGSGAKAGPSRHLRMYLVPCSCGTTFAVTEDHDSKGSSWNQYLKCPKCGKRHDPKNRLLLLNYQKDGYWKVEQC
Ga0307478_1000002360F000078AGGGGGVENLYCLRCNRELEAGRKSVAMYMFAQTVGIRPRQKSAAQRICFCPQCSVSLAMGPPPEGALNVAAWNMIRELVGSDPALNQAAWENLRGLVGLLPATGTDGAPRRASGEGYFEF

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