NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316217_10037083

Scaffold Ga0316217_10037083


Overview

Basic Information
Taxon OID3300031813 Open in IMG/M
Scaffold IDGa0316217_10037083 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2842
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053027Metagenome141N
F057847Metagenome135N
F096456Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0316217_100370831F096456N/AILPSDLGCLKSWVQDLRKKFPDHALLVVGDNFHLYSLVTNETGEGYIRAMSRFINEEIVAANRTTALFTMEIPKEQLRPGSRPTYLNLKGSAGLSFDAKANCGVYNQLQDWCDVPSNVDVWWESSEWMETVTNPDGVQARVAIRKPIIEVIIDKNKITGTKGTIFYRLEDKSGQMIECSDREQQQYRTRLVEAAATRDKADKSARSTLAGSRAAYRSKL
Ga0316217_100370834F053027AGGAMLLTERQIDLRLKCPMFDMEDRHRPSSYECAQKLLRWAVLDAFKGRLVPVTTLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYMHLMASTDYTAPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA
Ga0316217_100370835F057847AGGAGMPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVTDLRPHEHEWAIDHNHCTVCNKSKQQINEEQDEQTHPTAVQ
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