| Basic Information | |
|---|---|
| Taxon OID | 3300031813 Open in IMG/M |
| Scaffold ID | Ga0316217_10001097 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36598 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042051 | Metagenome / Metatranscriptome | 159 | Y |
| F069394 | Metagenome | 124 | Y |
| F071164 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316217_1000109723 | F071164 | AGG | MRISELLTAMASWLESPNNEALLLAETDDHCMKVVAESCVLAAELLKRAAEEVDAIEPPAESVITPQSIDETAVLAAALDNSDDPQLKRIASVLDELLLTIAAPPGAVAEKKAAENDRLEELRKKYEQPRKDLHEYNKIGVSEKAIDKSNFTKDYKILEAPLSARSCPDHPGAQMARVGEHMFQCELDKKTYNYETGYTLNNGSKVPGGDVSLQTQGLETSFHQIFDTREGRLGYNK |
| Ga0316217_1000109733 | F042051 | AGGAG | MTTFGEVSWTDDVFGGDDKKHTNSKDLFLRLDEGPNEVRLITQPFQYLVHKYKKEGDPGFGMKVQCSAIHGSCPLCADGDKAKPRWLLGVISRKTNTYKILDISFAVFSQIRKLAKNPKKGDPMKYDLNIEVDKNGGATGYYSVQSYDKEPLSATDQLIKDSVDFDDLKRRVTPPSADIVQKRIDKINGATDGNTAPVAVKVGGKVDTKPGTAKVTPAVSMADDSELEMTFPDHDAQA |
| Ga0316217_100010975 | F069394 | GAG | MIIIKAYSVQMSYNVTDEEKHQAEQAILSFKSTRNLLAEASEYLNIMKTPFKDNPDMTPKDIWKARPVIRRFRDKSIDNFDEFKSAAFQCVNLMQTFANDTQTLKLMKSFITSIDELEVKVNDFAELFEDLQSKDFSKNIVTKMEDIQKKCDDIDEIIDERIKTHIQTNILATNWVDSVSTELQTKVEKKTPLILDLFNKRQDQLNDAIEDRSTVGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |