NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310120_10063887

Scaffold Ga0310120_10063887


Overview

Basic Information
Taxon OID3300031803 Open in IMG/M
Scaffold IDGa0310120_10063887 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2150
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014327Metagenome / Metatranscriptome264Y
F015264Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0310120_100638871F015264N/ATLEWSQQLPFVQSVLVQAPSRATMIHGTTNRAISRAVATALEQGYSVGQLARGVPADKFPGLRSILTETENRARMIARTEIMRTQNQTSIGFFKDQGFEYVRADDIDGDPGDTYVDPGDPYGRTCAERNGQVYTVEQAQDIDDHPNGTLNWQPMPRNYRPEEVA
Ga0310120_100638873F014327GGAGLDTKELRNQAGALLDQAQTAVEQGEMETFQRLADEAQATMVKADEIDAAASQVRKLRGDFNQPLNSIPVTSNDVAIYNPMDKSSSIKGNYKPASWVKGMPAMAQPMWVQEQMGDNIKDEARFMTDTFIKWFRSPSDDMFWKTASPDEIKAMQEDTDAEGGFFVPEQFINSVIHDPGVPGSQLRPLCTVIRVSGKDGYLPT
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