| Basic Information | |
|---|---|
| Taxon OID | 3300031802 Open in IMG/M |
| Scaffold ID | Ga0310123_10069543 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2467 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 800 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003616 | Metagenome | 477 | Y |
| F004658 | Metagenome | 429 | Y |
| F051976 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310123_100695431 | F004658 | N/A | MPEYLKKVYEFFKTSNTAKDVLIGAVSFIAGGYILNKIVKRDEDDDLDS |
| Ga0310123_100695434 | F003616 | AGGA | MIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVTCRICKGTGLNAITHESGLVTLNKCVLCKGIKQRSNRI |
| Ga0310123_100695436 | F051976 | N/A | QNTLNFTETERDEIINYDEDVKQNTRATIESFVWSSATAPTPFSKKFTIEISETEPPKPKTSGFMSAGIAGAIAGLVLIGFIVDSKVGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |