NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10022290

Scaffold Ga0310123_10022290


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10022290 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4502
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F001493Metagenome683Y
F005685Metagenome / Metatranscriptome393Y
F023622Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_1002229010F023622GAGGMKTFKEFKEKSPTLTLIAEQVYFKVSIPDLSPMFMKASSESAVKLDMRMKLKPDVVKEVSIKRVTKSEMRKIYRDMGQGKEVEPDEKEKESAEEK
Ga0310123_100222902F000245AGGAMKTFKEYSLDRKLDKYVIDAIKKKKLAKHPVNATDDYKMKKGKPAFKIPSPTGEMVIHVWLRKMAPPATKDMMAFNYQLEDK
Ga0310123_100222903F005685GAGGMKKFNEYSSFEDKILATLKRGPSDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN
Ga0310123_100222905F001493AGGAMLTFKSFLKERAPAWTESLSTMLFDLPREGLADLKIPLSPAIFKRIWSESIRSKVFHLTDYAGLEKLKKMQGGKKSISAFYNMEDHIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPTTASDPGLGGGSKLKKIEKDLQDLLVEILIKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGEKAMWDELVVNNFKIQKVHVGPEFADDFRDDDDVEGFPFEVYDDAGDMVDYITRTVQKIKL
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