NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10007954

Scaffold Ga0310123_10007954


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10007954 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7753
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001606Metagenome664N
F001712Metagenome / Metatranscriptome648Y
F004658Metagenome429Y
F047719Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_100079541F047719N/AEDNMSIITEETDILKTAIRVVKSERFQRFCLKCGKILPTVIKQNYTHNCEKPDFLL
Ga0310123_1000795410F000730GAGLVSEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLTRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLSFVKGI
Ga0310123_1000795412F001606GAGGMTYGYDDVTTTSLGTGVAETQLNTATSLSAPDPAHAFLACIPYQSESAAFTPDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFASVQAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTESTNGAEQYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTYTGLGSAAGATTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0310123_1000795413F001712AGGMSASAGQPIGARAQNFGNSLLGRISGYTPFKNAAGANTPQTIGIDGIFNKWSGIGLASTVYGMLPLKMLPHKGKAKTLGKSLLTAGILSGIFMPTNTHSNLISPSRAITVSSSEVSYT
Ga0310123_100079543F004658GAGGMPEYLKKVYDFFKANNAAKDVLIGSISFIAGGFVLDRILRRDEDQDD
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