NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10144515

Scaffold Ga0310121_10144515


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10144515 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070688Metagenome123N
F095607Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_101445152F095607GGCGGMPFSIVGFGESEDRSGVPTAITPFAGDTISDVSGDELRISSIQNPAIGWIYTKSSAAGYPINDWKLSSPEIAAVPLLGTGGDSVGSDTYFGTQISPVQVDTRLFPSGYGMTNSSPLTCTMEEDDEAGVAHTASMVLAVVEQGESLMYNDGYARVDYYNRITGFSGNVTINEFKAYSCTSSGLTFNSLPDELVRIVNTRVEMANGTCYRWAFPGGSSSRPGGLVSNSNLSKTPEVNNFPTRSFRAITEHPQIEVVGSTAETILSVEIAYQRV
Ga0310121_101445153F070688GAGMPSVSVGTDPVKIVNANRFRTALTLNNIDGNTAIFLLDNITETKATGAVQLTGGQSRNYNITSAQFGNNQDGTPRFSGQRKVTSAHYAVSDSGTNTVHYEEEYN
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