NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10026266

Scaffold Ga0310121_10026266


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10026266 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4152
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015796Metagenome / Metatranscriptome252N
F033843Metagenome / Metatranscriptome176Y
F080155Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100262663F033843GAGGMKVRKTIYWVVGLLVFFGWCDLVWGQTEKWSGESVTLYTTLAGLSMIDAKQTFMMDEYRSYFDEIEPISYAHEVNPLMGESPTNDRIVAVKLLSGALTFYGLNKMKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL
Ga0310121_100262666F080155GAGGMVNTYLSLEYIAIVLFGLIMVLFSIGSVYLNIDEDKKDE
Ga0310121_100262669F015796AGGAMNKYQMKKYDDTKDRVLIREWFKLRSVVLEHGSKYGVDLEGKDYDVEISHLSFDSLWNQWKKENRFRIEIRKRNHYWDGLYNESHTTHFVQMNKSGHELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMSIPFDIGKDVIKRYEI
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