| Basic Information | |
|---|---|
| Taxon OID | 3300031801 Open in IMG/M |
| Scaffold ID | Ga0310121_10009261 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7885 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 486 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001606 | Metagenome | 664 | N |
| F001922 | Metagenome | 617 | Y |
| F022118 | Metagenome | 216 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310121_1000926112 | F022118 | N/A | MITIPDFKCSKQSSHGREERIEFIISEVKKHPNYHFEGAAYTTEKCSDLASVDDLINLCLRMMHYAPQTRKDITEQILMEMKII |
| Ga0310121_100092615 | F001922 | GGA | MVIQKLLVEEGMKRGLKVSREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVMEYMQYDRMLKEKQEKPNITTGAVFAMIGLGLSLITFPQIVQKIQEMRVINGS |
| Ga0310121_100092616 | F000730 | GAG | LVNEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLSFVKGI |
| Ga0310121_100092617 | F000704 | N/A | VAKMPHARSEVQPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAVVTRDVEDSNQPMDDFPAVYSAVDAGLLLNEGNDTAFSQVYSFVPDMTAIIYAIHLVFPAVVTCSAFTSGTLNVGALHIKITERSTNNRLLYENTFQSNAANLTATGTSLHFFQRDIVETIKIEKGNPVDILVELVTVITGTNTRQEGYCGLAPYLKTAVLKRFTPAGMALHLHADLSHADGVFKYKKDRVSMLGQ |
| Ga0310121_100092618 | F001606 | GAGG | MTYGYDDVTTTGLGTGVAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVQPICGATVIYDTESTNGAEQYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |