| Basic Information | |
|---|---|
| Taxon OID | 3300031801 Open in IMG/M |
| Scaffold ID | Ga0310121_10009258 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7886 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 486 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001606 | Metagenome | 664 | N |
| F001712 | Metagenome / Metatranscriptome | 648 | Y |
| F004658 | Metagenome | 429 | Y |
| F022118 | Metagenome | 216 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310121_100092581 | F022118 | N/A | MITIPDFKCSKQSSHGREERIEFIISEVKKHPNFHFEGAAYTKEKCSDLASVDDLITLCLRMMHYAPQTRKDITE |
| Ga0310121_1000925812 | F004658 | GAGG | MPEYLKKVYEFFKTNNAAKDVLIGSVSFIAGGFVLDRILRRDEDQDEEEE |
| Ga0310121_100092582 | F001712 | N/A | LARRGRKATTKTVTRRRRRLPSRKKVSKSIGSQWGKISKGAGVLAFLSNVTGSDMSASAGQPIGARAQNFGNSLLGRISGYTPFKNAAGADIPQTIGIDGIFNKWSGIGLSSLVYGMLPVKMLPHKGKAKTLGKSLLTAGILSGIFMPTNNHSNLISPSRAITVASSEVSYT |
| Ga0310121_100092583 | F001606 | GAGG | MTYGYDDVTFTSTLAGSTAEVQLNTATSLSAPDPAHAFNAVIPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAVPALLAYPINTPLAGGEHLNFYAEPLTSNVVAAGVGATVLYDTKSTNGAEQYYTRPTNENASSATINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRIAVQPTATGLGAAANAITGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN |
| Ga0310121_100092584 | F000704 | AGGTGG | MPHLNGEIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHLKITERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETLKVNKGNPIDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSMLGQ |
| Ga0310121_100092585 | F000730 | AGG | LVNEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVNDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |