NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10006809

Scaffold Ga0310121_10006809


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10006809 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9517
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F011890Metagenome286Y
F012068Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100068091F011890AGGAGMKKLIIVLLTLLFTTVSYAETITIINSGKAGGSFNARTQIYKDGLIAKGYDINFENIGKLSQAVKMFKETDKPTIMIYSNNVVYKQDLFHTKENFIILEYQQPLFFCQTNASKNKTDGLTVAHGKGYDTTMLTNVFAKLSKKVTLVPYKNSGAMLKGILGGDVDMMFNNQGKSLKYIKSGEGYCWGNTGTSETIGVPSVYDAYNIDSKLPLMQATVIGTNIDVKVIREVIVEISNEDALTEYHTSRSLYRPSGTWDEELK
Ga0310121_1000680913F011254N/AMRVDIKTKNSIDKVTIINLDKELLPKLGTIFIGDNWHKLLIPCNRHNIIDITISGESIKHCLNSGRETEQGYEIWLHGNLAEYFSRISECIAQDDLLHYKDLDNKYLHTVSWNEKIEGDFIPTYVKQFFATGEGPYWHHKDDFANLPYVEYNGPDIDTNINLDEDLQYTDSKFYGEGQCKSLKQQPVLPTIKIDEIKNKKLKETMQQFGFTEILQMQYVELKPNSVIPVHRDDFTYENGRYIINGPTQLYCVLSGSSKDIKFKFKNAGLIDTSKPIFINNQKFIHSLVYTGEKPRGVLLAYGIRSN
Ga0310121_100068093F012068GGAGMNTLAKMFEPSKDRLISNAKKMMENATDPWFKQYWTKVYVHLCKQYKKLH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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