| Basic Information | |
|---|---|
| Taxon OID | 3300031800 Open in IMG/M |
| Scaffold ID | Ga0310122_10054813 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2114 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005749 | Metagenome | 391 | Y |
| F012582 | Metagenome / Metatranscriptome | 279 | Y |
| F081450 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310122_100548131 | F005749 | AGGAG | MKKSWLLIMSFDERDGSPNDIKTLYHGKTKQSMVKVMNLFQDMNEHLVLSLVEIDKKSTYDKIIDKEDSEEMFFMDSKTNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA |
| Ga0310122_100548136 | F012582 | N/A | MTEFHKKLKHLSATMLHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDVKLKKKEMEMCNQLYKYYGSVYDPV |
| Ga0310122_100548137 | F081450 | GGA | MTQFEEKSCKVLGVIVFLLIVMTWLQISGCYSPPQPEMEGELIPDYID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |