NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10045904

Scaffold Ga0310122_10045904


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10045904 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2357
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021405Metagenome219N
F081442Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100459042F081442GGAGMKLFEKDNRKWTNEEIESNPGRLAAQIVFNQLFDNNFYMWFVGNTDGNQLYTVTLSNEEKAIVGFTNESNASNYINRKNIIRQISRTFGPKVVLVNLSLHKIHEVMQNNFSASVQITPDVMTHQFMKQPIHTVIVNPNDDDFFIPLNIPYIIKRYNEDNENTGFEIEEHKDNKELSFYEIDRESKRYVFCPEGVGENGPEFGENL
Ga0310122_100459043F021405AGGAGMTTEILEIDEDRLGYRVGYIKEKLLQMSKSLRVQIPEDLTDQDLTEDNAFKQWIIINSIYDASQTDVENENFNRMLYYLFDKSKGNIARMVNNYDINIKLNSAGQLEDMNLVVLETETFEEDNNGK
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