NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10032692

Scaffold Ga0310122_10032692


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10032692 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2913
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F002745Metagenome533Y
F005685Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100326921F001493N/AMKRFKEFIKERTPAWTESLSTMLFDLPREGLKDLKIPLSSPIFKRIWPESIRSKVFHLTDYDGVGKLKKMQGGKKSISAFYNMEDHIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPSTASDPGLGGGSKLKRIEKDLENLLVDILVKNDLGPYKKGLTTRELNRAWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSIFTDYTKKRTLDPDEDSGEKAMWDELVVNNFKIQKIHVGPEFADDFRDDDDVEGFPFEVYDDAGDMVDYITRTVQ
Ga0310122_100326923F005685GAGGMKKFNEYSSFEDKILATLKKGPYDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN
Ga0310122_100326926F002745N/AMKRFKQYLREFAIQSTSDYVFNAGTNSSGLMIPISGPMFKRIWPDTIRSTVFHTTDSNGLKALKKLEGGKKTISAFFSMMSRYMEGGIATGGGIVAEMEADVLISAKDDIMSVVDKTGRRWVEMSWFENAQGYGNPAGFHKVEKDLNTLIKNLVKKHLTPILGKNAVVREHEYELWGNMKRHLKGDGQKLRLVIKDYFDGMEKVIKKNKEVMGGIFYGYAKSKRMTDNAWDEQIVNNIKVKTVHLITFTQTPNKKEEEIIEYVNSTKWPLKTWDVSIDLEIYTRQVVAKEIGRKIR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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