NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10015500

Scaffold Ga0310122_10015500


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10015500 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4540
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F013775Metagenome268Y
F037260Metagenome168Y
F081450Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_1001550011F013775GAGMVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSRGSYYQDGRMNFVIKKIPSNFYVWTNEYSRYNKTEKSQKLLNTIRDRVKKLIILTTTHLDVDLNFDYHKDVRYKPIPEGWDDEQNS
Ga0310122_100155002F081450GGAMTQFEEKSCKVLGVILFLLVIMTWLQISGCYSPPQPEMEGEPFPDYIDDVEMKNLA
Ga0310122_100155004F003091GAGGMSMLPQKPITKPGEGKGAQRQKYLSEERYLEERWDISLGLKGPKRLEGESYEKYVIRRKSENGLLKEYRRGVWIKKKD
Ga0310122_100155006F037260N/AMAKKKKSIPFHEKHNYKKWTSDQGYKFWAKDEEDAKLYLEKTEGNLGSLKEVEVKDV
Ga0310122_100155008F005749AGGAGMKKSWLLIMSFDEHDGSFNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEIDKKSTYDKIVDKEDSEEMFFMDSKRNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA
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