NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10005080

Scaffold Ga0310122_10005080


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10005080 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8234
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001606Metagenome664N
F001922Metagenome617Y
F047719Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_1000508016F047719N/ATNTNGVENHMNESWKMVTDDTGLLQTAIRVIKIEKFQRYCLKCGKILPTQIKQHYVHTCEKPDFLL
Ga0310122_100050804F001606GAGMTYGYDDVTFTALTTGTTETQINTATSLSAPDPAHGFNACVPYVMELGAFTVDESLFIAFRIQSDDVAVEPKKFVLPNINTGDGSFTSVQAPALLAYPINTPLAGGEHLNFYAQPLTSNIVAPGVGATVIYSTDGTNGAEQYYTRPSSATAGGTAINTRTTGGDMTIQGGNEITALYSVVSGATATASQHTVGYSEFVSPDFNTSMPYRIAVQPTATALGSNANAETGGDGLMKYEMPRGQGIPLANNVTITNYYTNRDARTGADNFINFVRYSKN
Ga0310122_100050806F000730GAGLVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSVHTDSQIDDLINNAPRILNEINKTIAEQKEQGVSDEQMKGIFQKKQMLELVTNNAEVINIIGKPIIKKLLSFVKGI
Ga0310122_100050807F001922GGAMVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFRATISGGIWLNSLAGFFGVKFPDTLPEWTVKLFTTGYHNITFWQVVQVISVLIIVMEYMQYDRMLKEKGEKPNATSSAVFLMIGLGISLVTFPQIVQKFKEMRILSKAPRTDVTKGFGGEPL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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