NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10518484

Scaffold Ga0315900_10518484


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10518484 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F017972Metagenome237Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_105184841F017972GGAGGVKTRHLQLVSSKHSDTTSNKENVRSHFGPVNPASTTLLAQETLRANQEAQLSELLSSLESVVDNLNFKSFTVYDTLNTAIEAVSAALKDT
Ga0315900_105184842F044984GGAGGMTDEVKRRMATANRKAVRDRNYRRARDRALARLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLRVGVHTRANGANDLAYSSNAGENEGNDGGEA
Ga0315900_105184843F001477N/ARKLEKEASNIYTIHPKKSELILLYEVVDESGRAEWGGANAEHAIQWLSLAPADARILVSAWDSDEEDAHLVGQTIDITEIVRVASL
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