NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10039363

Scaffold Ga0315900_10039363


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10039363 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5130
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F011473Metagenome290Y
F016922Metagenome243Y
F057879Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1003936310F016922N/AMSAIRINSRAIQCVADAEGATEYVVRYAGRDFIVTAHSRYDAEEAAEYYRPETTDESQPDLIK
Ga0315900_1003936314F011473N/AMNWKKYITDPETNRPKRGAISRIAALLGTHYNCVRRMFDGIWNPTDEEAKGLRAIVSSRTNLAPKKRSDAGKKRGQYRKRAVAKSGVAAPQVKALRSAKNTARKLN
Ga0315900_100393633F009945GAGMSALTTFKRTHGVATHRLTGAGHRYPWMAFFAEIWMKDGTRRAFTELAHEYSMLELRRRDKVADADTELEACKLLAKRNRIPWPA
Ga0315900_100393637F057879GGAMTEPSTEQTDPKLAVRPEPVPAGGEQESESPFAGAAQVPPWEL
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