NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10024461

Scaffold Ga0315900_10024461


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10024461 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6887
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008619Metagenome330Y
F014737Metagenome / Metatranscriptome260Y
F022651Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100244611F014737GGAGMTTTMDALSSASIRHTEFVRLTTGNATLTYCNAGAPITVDGITFSGVSQVLNISDIPQDIKSTSDDVSVSITGLDPADIVYVLGANVKGSKIEIWRGFLDSNNQIITSPTTQFFRRYTGFVNSVSINEDFDEQNRMRVATITVACTSFRRILETRIASLRTNQKSWQFFYPGDTSMNRVTQISN
Ga0315900_100244612F008619GGAMSFQTIFEIQQSMTVNNRRNVGQQVSRAGYLRTAQYLTTVPWVFTITPHNFLYYPQARSIIQTIDNLDRQNAERVIFTSTSAVSWFTKYQGDISSPLFTLAATPAANATTISINVSVGAGFALKAGDFIMINGYTYKVTADVTRSSSPKSVTIHRPIIGSPTSGATVYVGNDVSFDLKAESCPTYTLTPMTNGAFVNWDGPFVFRENIAP
Ga0315900_100244617F022651N/AMTTIQNTNDLLGFLINQAESRKDWFGFTQQRLTAVSLAHDIAKIHANTMSPEEVVDFAVRVNDAIYQNIIKPR
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