NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10011869

Scaffold Ga0315900_10011869


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10011869 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10762
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014496Metagenome / Metatranscriptome262Y
F047645Metagenome / Metatranscriptome149Y
F049499Metagenome146Y
F058095Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1001186917F014496AGGMKTYSIEDLLVGQTYYPRSLARKYQYGEITFAEKREDIWLDGYEAYAICFNGNRWATVAVKVAD
Ga0315900_1001186923F047645AGGMPCRHIYEYVYQDICPDCGRYTHEPDRELDLRLFKEYYASGKHLSYKCPVEGGTIRGWWS
Ga0315900_100118697F049499AGGMLTMDYRMVDVLNSDQLEVNDLIGLSDEIVKILFITPTKIGFDLLIENEFGEKDTIEIADDEQFELFILE
Ga0315900_100118698F058095GAGGMEYMYVITTYYDGELYNTHRITDFTDAARVWELCKDSGNAKEYATYNLTDPAGKMYTKNFYTDGRVSVK
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