NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10076434

Scaffold Ga0315899_10076434


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10076434 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3466
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053851Metagenome140N
F103118Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100764343F053851N/AMVSISVMHNFTIDYTDGLVINNNYNDVEFAKDKQSHYMVKTYFVHKKIKRSLQSHPDQLGITATIEETHSSSDKTLLTTNNCNLGCWLMPSFVKHFVPYHVDIYYNDKLYQSDTMDCKYKLVNFTLHPKDNRELYTWMNVIENFKKQMHCDISIKNDTVASTTEFDHIADVKYNTDDTNKQYYLGLHIGRFYQPNTQMPDINYHPDQLHNKNSLDIINDILYYYTTII
Ga0315899_100764344F103118N/AMHNTVLMILSVRNSKSFEQSVNKLQCEKIWFKGYREHELAPIINDFIKNSNFENYFITPDDLIIKPYQFDQLKNALHCHDIVSGWGVIRQNCTHTTITKPHNFLQQNIFKHQFTTNYLKNQQYNFSYKTHEINSLPNQIETAFTGWFYTGMKKHIWTQYPYECLNPPFASSDLMFSRRVLFDNKYKQICIKSANVIHLSNSNTMSTDTSFFDMSTCFSNKSILKTF
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