NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10028208

Scaffold Ga0315899_10028208


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10028208 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5924
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F017122Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1002820812F002867GGAGGMSVVHSTDYGNGYTLDQLENERGELYYRACKGSICRYAEDHYIAMMYLEGMGWDPKADPQ
Ga0315899_100282084F004722GAGMSLPRTGRELVMEWLMREIRLAKTSDLHRMAAFLEFARRVRKGSRQQRTGARLAQSNSWRKDVDEDVRWRV
Ga0315899_100282086F017122N/AMEVVPFQEQLDPELRLGEGRSRTSAEKTALFELKIWLPGQGAMRDLIRAESLQQAITFATNRYPNCKVEVPEQTAKKPRLVRSKRGPKETARRNLKLVEAKREQS
Ga0315899_100282088F003805N/AMRPIEHSPESSFHKAVTDKWLVDLFNRQDYRALLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA
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