NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315899_10026676

Scaffold Ga0315899_10026676


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10026676 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6101
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085619Metagenome111N
F088244Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1002667610F088244N/AMGQDKLIPPLAPEAAGIITGSEQILKEYASASSLTATDIKRLIEDVLHNPDFNADDVDTDMLERLARSIDSGDLEIINMHQEGDGAQKLELFKRPAEKVLRELIADIRLAGCQHFAFKEYLDPHGNRLFAGHSNGSVSFQLAQLRIGEGKVPVSLVIYIDATYIKKGIPIRPIYCKSKNISYTIYYTISYTTSYTIYNTIYRIRYRIRYVVRCRIRYIVENKHV
Ga0315899_100266763F085619N/AMQDTLCLVAPYPFRLEPLEDFDPLSDFDMTGGDDVWYARPQLFFSCTLCPTGQMGDRGSHREVSLVFFSTFEPIDLQRDSVLQRNGIPMLYERAASQLPTLYICPFENVLGRAPLSPCYMMGNKHNTIPYALRYEVPDGAAADSREDNGTGSRLFEVNIWMWRYGRAFPRKVSVKDAEEMRRNRVAESRRKGAATLKRRREAADAAARAQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.